yana-notes

Genetics

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Genetics #

Book Notes #

  • Genomics is the study of complete DNA sequences of a species or an individual.
  • Variable messages transcribed from the same gene are called splice variants.
  • Regulatory DNA sequences (promoters and introns) that control whether and in what quantities a gene iss expressed in a given cell type.
  • Chromosones (generally?) get progressively shorter from 1->22.
  • Transcription: Copying a segment of DNA -> RNA -> mRNA. This takes place in the nucleus.
    • RNA polymerase converts the gene into pre-mRNA (aka primary transcript mRNA), which contains introns, which are then removed during RNA splicing, leaving mature mRNA.
  • Translation: In the ribosome, mature mRNA provides a template while tRNA (transfer RNA) carries and supplies the amino acids, eventualy producing a polypeptide.
  • Codon: Basic unit of 3 nucleotides, which form an amino acid - or signals a stop: 440
    • As you can see, Methionine is always the only start codon (for archaea). And therefore, always AUG?
    • Degeneracy” refers to the fact that the amino acids besides methionine and tryptophan have >1 codon.
  • Gene: a stretch of DNA that encodes for a… product. Not all transcripts are mRNA (it can also be rRNA or tRNA) so it wouldn’t be accurate to say otherwise.
    • Promoters are where RNA polymerase binds.
    • Enhancer somehow enhance binding of transcriptional machinery.
    • Silencers (operators in prokaryotes) bind transcription factors or something.
    • There’s something like 37,000 genes in the human genome.
  • Intron: A region in a gene that is removed during mRNA processing beforew transcription; this is as opposed to an exon.
  • Incomplete dominance is when two alleles mix. For instance: A/A = red, a/a = white, and A/a = pink. Unlike eye colors.
  • Co-dominance is expressing the phenotype of both alleles simultaneously. For example, having the blood type AB = both A and B antigens.

Karyotype/Chromosome physiology #

  • Centromeres are where microtubules bind on the chromosome: 400. DNA Sequencing returns blank/filler characters where the centromere is.
  • The banding is known as Giesma/G-banding. AT/GC ratio is relevant, since GC-rich domains indicates density of genes and open chromatin (euchromatin) (higher transcriptional activity), and this = light bands.
  • Chromosomal locations of a gene follows this notation: 360